Science and research
At the Institute of Medical Physics and Biophysics, we focus on several research areas using advanced analytical methods. In photodynamic therapy, we investigate the effectiveness of light-activated compounds for targeted cancer cell destruction.
Using TEM, SEM, and EDX, we analyze the presence and distribution of metals in the human body, while PIXE is employed to detect trace elements in brain tissue, including studies on the effects of electromagnetic fields.
In the mechanobiology laboratory, we examine the physical properties of cells and their response to external stimuli using BioAFM and ELISA. Our goal is to contribute new insights with potential applications in medicine and biotechnology.
Photodynamic therapy
We study the mechanisms and identify modifying factors of one of the cancer treatment methods — photodynamic therapy, which combines the effects of visible light and a photosensitizing substance that predominantly localizes in tumor tissue.

Study of proton-induced radiation damage to cells
Ionizing radiation represents one of the major health risks that must be assessed when planning long-term space missions with human crews. Protons are among the dominant components of galactic cosmic radiation and solar eruptions, with energies reaching up to 1020 eV, and their abundance generally increases as energy decreases. Prolonged exposure to this type of radiation can lead to damage to biological tissues, posing a significant factor in evaluating health risks for astronauts. At the Institute of Medical Physics and Biophysics, research is being conducted to study the effects of low-energy protons on biological samples. Irradiation experiments on cell cultures allow for the analysis of cellular damage mechanisms and the evaluation of DNA repair capacity. Damage to cellular structures caused by ionizing radiation is a critical aspect not only in space research but also in medicine, particularly in relation to radiation therapy for cancer treatment. Studying these processes provides valuable insights into the biological consequences of proton radiation exposure, contributing to the development of protective measures for astronauts as well as the optimization of therapeutic approaches in oncology. This study focuses on conducting a series of irradiation experiments on cell cultures to evaluate the impact of physical parameters such as proton beam energy, exposure time, and source distance on the morphological and structural changes in cells. These experiments will enhance the understanding of ionizing radiation interactions with biological systems and contribute to expanding knowledge in the fields of radiobiology and space medicine.
Determination of metals in the human body (TEM, SEM, EDX, ...)
We also deal with the use of other physical methods in the study of cells and tissues, mainly in terms of the presence of metals (iron, copper, ...) and other substances foreign to the body that accumulate in them for certain reasons (metabolic disorders, environmental pollution, ...). Recently, this has mainly been the study of the localization, distribution, structure and magnetic properties of iron in selected brain structures through various histological, immunohistochemical methods and mainly physical methods. We also use light (polarizing, fluorescence) and electron (scanning and transmission) microscopes with EDX analysis. Most recently, we use SQUID magnetometry and Mössbauer spectroscopy in the investigation of iron oxides.
Using transmission electron microscopy (TEM), we are able to observe ultrastructural changes in tissues and cells at the nanometer level.
Scanning electron microscopy (SEM) with energy-dispersive analysis (EDX) makes it possible to investigate the structure and elemental composition of particles in cells and tissues.
Determination of metal elements concentrations in human brain tissues (PIXE)
The most abundant heavy metal, iron, is stored in human body mainly in the brain tissue. Iron is a fundamental cofactor of many different enzymes in the human body and it is needed therefore for normal neuronal function. It is well known that metal ions in substantia nigra (SN) are associated with neuromelanin structure in substantia nigra pars compacta. Neurons store iron in the form of ferrous ions which is linked with neurodegenerative diseases such as Alzheimer’s and Parkinson’s, Friedreich’s ataxia, and Huntington’s disease. Post-mortem brain tissue sections from SN were obtained during the autopsy to prepare tissue sections for the pathology diagnosis at the Institute of Pathological Anatomy of the Comenius University. Original samples of substantia nigra pars compacta were first investigated by light microscopy and SEM (scanning electron microscopy) with EDX (Energy-Dispersive X-ray spectroscopy) for qualitative analyses. Thin slices (5mm) of the brain sections were placed on 2 μm Mylar foil and then fixed on frame holders. X-ray spectra from the PIXE analysis using 3 MeV proton beam (1 – 2 mm spot in diameter) with the intensity of ~ 3 nA with the sample tissue were collected. Up to 30 spots were measured on each sample. Fe, Mn, Cr and Zn concentration distribution maps were created. Maps with highest observed values for individual elements are shown in the figure (gray color represents the background level of the measurement).
Published in Journal of Radioanalytical and Nuclear Chemistry
Pánik, J., Kopáni, M., Zeman, J., Ješkovský, M., Kaizer, J., Povinec, P. P., (2018), Determination of metal elements concentrations in human brain tissues using PIXE and EDX methods, Journal of Radioanalytical and Nuclear Chemistry, 318, 2313–2319, doi: 10.1007/s10967-018-6208-3.
Determination of metals in rabbit brains after EM field irradiation (PIXE)
In cooperation with Medical faculties of the Comenius University in Bratislava and Martin a rabbit brain slice samples were received to determine iron concentrations and map its distribution in the specimen. The aim of this study was to evaluate concentrations of iron in these samples on various spots. It is expected that the iron in the rabbit brain was produced by electromagnetic radiation similar to one generated in mobile telephones. The observed effects in the brain tissue may be due to electromagnetic radiation, which causes agglomeration of iron in the tissue.
Proton beam (3 MeV energy, 300 pA intensity and 1.5 mm diameter) was used for the analysis of 4 samples:
- Blank sample unexposed to electromagnetic (EM) radiation
- Sample denoted as “First sample”, exposed to EM radiation. High Fe concentration (up to 50 ppm)
- 2 samples, RB01 and RB02 exposed to EM radiation. Low Fe concentration (up to 5.5 ppm)
A photograph of each sample was placed into the background of the Fe concentration maps. Dimensions of samples in millimeters are shown in the graphs. Fe concentration scale is different for the “First sample” because of much higher values compared to the other 3 samples.
Published in Bratislava Medical Journal
Kopani M, Panik J, Filova B, Bujdos M, Misek J, Kohan M, Jakus J, Povinec P. PIXE analysis of iron in rabbit cerebellum after exposure to radiofrequency electromagnetic fields. Bratisl Lek Listy. 2022;123(12):864-871. doi: 10.4149/BLL_2022_138. PMID: 36342872.
Mechanobiology Laboratory (BioAFM, ELISA)
1. BioAFM combined with an inverted fluorescence microscope
Type: JPK NanoWizard® Sense+ AFM head JPK Manual Precision Stage for the NanoWizard® – Life Science Version (Bruker)
Inverted optic microscope Zeiss AxioObserver3 with 1/1.2" USB3.0 color camera (Zeiss)
Basic specifications:
- allows scanning in air and liquid
- imaging modes: contact mode, tapping mode
- application examples: force spectroscopy; force maps; imaging; ....
- light source Colibri 5 Type RGB-UV (excitation: 385 nm, 475 nm, 550 nm, 630 nm)
- objectives - magnifications: 4x, 10x, 40x
Location: Institute of Medical Physics and Biophysics, Faculty of Medicine, UK Sasinkova 2, 813 72 Bratislava; 3rd floor; Room 14
Contact person: PhDr. Michal Trnka, PhD. (michal.trnka at fmed.uniba.sk); Ing. Daniel Kosnáč (daniel.kosnac at fmed.uniba.sk)
Literatury:
Schillers H, et al. Standardized Nanomechanical Atomic Force Microscopy Procedure (SNAP) for Measuring Soft and Biological Samples. Sci Rep. 2017;7(1):5117. doi: 10.1038/s41598-017-05383-0. PMID: 28698636; PMCID: PMC5505948.
Krieg, M., et al. Atomic force microscopy-based mechanobiology. Nat Rev Phys 1, 41–57 (2019). https://doi.org/10.1038/s42254-018-0001-7
Plodinec M, Lim RY. Nanomechanical characterization of living mammary tissues by atomic force microscopy. Methods Mol Biol. 2015;1293:231-46. doi: 10.1007/978-1-4939-2519-3_14. PMID: 26040692.
2. ELISA multimode microplate reader
Type: Varioskan Lux multimode microplate reader (Thermofisher Scientific)
Basic Specifications:
- plate analyzer formats: 6 – 384 wells
- scanning: absorbance (200 nm – 1000 nm)
- fluorescence (bottom and top) (emission 270 nm – 840 nm)
- luminescence (phosphorescence) (360 nm – 670 nm), narrower wavelength range selection currently not possible
- time-resolved fluorescence (currently inactive)
- temperature range 4°C-45°C
- orbital shaking
- atmosphere CO2 control: NO
- injectors: NO
- SkanIt Software
Location: Institute of Medical Physics and Biophysics, Faculty of Medicine, UK Sasinkova 2, 813 72 Bratislava; 3rd floor; Room 10
Contact person: Mgr. Radana Gurecká, PhD. (radana.gurecka at fmed.uniba.sk)
RNDr. Beata Čunderlíková, PhD. (beata.cunderlikova at fmed.uniba.sk)
Literatury:
Revankar C. et al., Cellular and Biochemical Assay Applications on the Varioskan™ LUX multimode microplate Reader https://www.thermofisher.com/document-connect/document-connect.html?url=https://assets.thermofisher.com/TFS-Assets%2FCMD%2Fposters%2Fvarioskan-lux-reader-applications.pdf
Montoya L A et al., New and improved cellular health evaluation of 2D and 3D cellular models using microplate reader assays. https://www.thermofisher.com/document-connect/document-connect.html?url=https://assets.thermofisher.com/TFS-Assets%2FBID%2Fposters%2Fnew-improved-cellular-health-evaluation-microplate-reader-assays-poster.pdf
Acknowledgements
This laboratory was created thanks to support from the Operational Programme Integrated Infrastructure for the project: Research and Development in Medical Sciences - the path to personalized treatment of serious neurological, cardiovascular and cancer diseases (ITMS code: 313011T431), co-financed by the European Regional Development Fund.
Publications that were created thanks to the support of the grant
- Čunderlíková B, Klučková K, Babál P, Mlkvý P, Teplický T. Modifications of DAMPs levels in extracellular environment induced by aminolevulinic acid-based photodynamic therapy of esophageal cancer cells. Int J Radiat Biol. 2024 Feb 6:1-15. doi: 10.1080/09553002.2024.2310002
- Čunderlíková B, Klučková K, Mlkvý P, Teplický T. Toward understanding the interplay between cancer cells treated by aminolevulinic acid-photodynamic therapy and immune cells. Zborník abstraktov XLIV. Dní Lekárskej Biofyziky, str 28.
Currently Grant Projects
- KEGA 040UK-4/2022 (2022-2024)
"Content innovation and digitisation of the compulsory subject Medical Biophysics and related compulsory optiional subjects." Project leader: doc. RNDr. Mgr. Katarína Kozlíková, CSc., coordinator: doc. RNDr. Martin Kopáni, PhD., doc. RNDr. Silvia Dulanská, PhD., RNDr. Eva Kráľová, PhD., Mgr. Radana Gurecká, PhD., PhDr. Michal Trnka, PhD., Ing. Daniel Kosnáč, Mgr. Ján Pánik, PhD. |
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"Implementation of the latest scientific knowledge about the health risks of electromagnetic fields into modern medical education." Project leader: PhDr. Michal Trnka, PhD. , coordinator: RNDr. Eva Kráľová, PhD., doc. RNDr. Martin Kopáni, PhD., RNDr. Zuzana Balázsiová, PhD. |
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"Interakcie arbuskulárnych mykoríznych húb s rastlinami v stresových podmienkach a ich potenciál pri fytoremediačných metódach." coordinator: doc. RNDr. Silvia Dulanská, PhD. |
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"Nuclear chemistry today." Project leader: doc. RNDr. Silvia Dulanská, PhD. |
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“Úloha pohlavných steroidných hormónov v etiológii mozgových gliómov." Project leader: Mgr. Barbora Filová, PhD. coordinator: Turčáni Peter Prof. MUDr. PhD., Čunderlíková Beata RNDr. PhD., Wagner Alexandra Ing. PhD., Polakovičová Simona MUDr. PhD., Lorencová Mária MUDr. |
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"Multiscale Hippocampal Models for Neuronal Plasticity: Integration to the Brain Simulation Platform (HippoPlasticity).” coordinator: RNDr. Jaroslav Varchola, PhD. |
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"In vitro 3D total cell guidance and fitness.” coordinator: RNDr. Beata Čunderlíková, PhD. |
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"Lifestyle characteristics of university students; investigation of eating behavior." Project leader: Dr. Norbert Buzás, Ph.D., coordinator: Mgr. Radana Gurecká, PhD., doc. RNDr. Martin Kopáni, PhD. |
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"Centrálny systolický tlak v optimalizácii liečby hypertenzie."Project leader: Doc. MUDr. Jozef Bulas CSc. coordinator: Doc. RNDr. Mgr. Katarína Kozlíková, CSc., PhDr. Michal Trnka, PhD. |
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"An integrative action for multidisciplinary studies on cellular structural networks.” coordinator: RNDr. Beata Čunderlíková, PhD. |
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"Agregácia prechodných kovov v živých organizmoch.” Project leader: Prof. Ing. Roman Boča, DrSc., coordinator: doc. RNDr. Martin Kopáni, PhD., Ing. Daniel Kosnáč |